Interpretation of the outputs of PREDIPATH script

Date: 07/12/19; time: 14:02.

Your text results:

    Input file: genomeXmp3.fa
    Genus: Ralstonia
    
    Classes:
    NPP = Not plant-pathogenic
    PP = Plant-pathogenic
    
    Search of specific k-mers
    Classes,Kmers_per_class,Query_genome,Percent
    PP,5167,4635,89.70%
    NPP,1262,200,15.85%
    
    Search of specific genes
    Classes,Genes_per_class,Query_genome,Percent
    PP,19,19,100.00%
    NPP,1,0,0.0%

Informations

Your genome was read in the file: genomeXmp3.fa

You are working with genus: Ralstonia

2 classes are defined:

- class 1 short name: NPP long name: Not plant-pathogenic

- class 2 short name: PP long name: Plant-pathogenic

Explanation of results for the block: Search of specific k-mers

Class PP is defined by 5167 markers. Your query genome has 4635 of these makers, which represents 89.70% of the markers.

Class NPP is defined by 1262 markers. Your query genome has 200 of these makers, which represents 15.85% of the markers.

Therefore, your genome belongs more likely to class PP.

barplot1.png

Explanation of results for the block: Search of specific genes

Class PP is defined by 19 markers. Your query genome has 19 of these makers, which represents 100.00% of the markers.

Class NPP is defined by 1 markers. Your query genome has 0 of these makers, which represents 0.0% of the markers.

Therefore, your genome belongs probably to class PP.

barplot2.png